PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn129751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 193aa    MW: 22163.3 Da    PI: 5.1992
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn129751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.33.8e-5260154397
       NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 eq+r+lPianv+rimk++lP nak+sk+aket+qecvsefisfvt+easd+c++ekrkt+ngdd++wal++lGf+dy++plk yl++yreleg++
  Achn129751  60 EQERLLPIANVGRIMKQILPPNAKLSKEAKETMQECVSEFISFVTGEASDRCHKEKRKTVNGDDICWALGSLGFDDYAKPLKRYLERYRELEGAR 154
                 89******************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-5257170IPR009072Histone-fold
SuperFamilySSF471132.33E-3961168IPR009072Histone-fold
PfamPF008084.6E-2764128IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.7E-1992110No hitNo description
PROSITE patternPS00685095111IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.7E-19111129No hitNo description
PRINTSPR006159.7E-19130148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVLLQCDLEC LIGKRMFGEQ HVRVKQDQTI SSFFLLFVEM VDNIGSNSDI FEEDGVIIME  60
QERLLPIANV GRIMKQILPP NAKLSKEAKE TMQECVSEFI SFVTGEASDR CHKEKRKTVN  120
GDDICWALGS LGFDDYAKPL KRYLERYREL EGARSNNQNR ATNSNEERDM EPRIPIKFGV  180
IEESNKSFSR RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4160149392Transcription factor HapC (Eurofung)
4g92_B3e-4160149392Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652046.16e-73PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822483e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLF6HPZ67e-73F6HPZ6_VITVI; Putative uncharacterized protein
STRINGVIT_07s0104g01640.t012e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-60nuclear factor Y, subunit B5